PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010928945.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 903aa    MW: 99669.3 Da    PI: 5.0584
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010928945.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.29.4e-06311331526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C ff + G+C  G++C+F H 
  XP_010928945.1 311 ICAFFKQ-GWCIKGNSCSFLHL 331
                     5998888.*************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.71E-6306330IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.122306333IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-4311334IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 903 aa     Download sequence    Send to blast
MPKRPAPGFD STPERSAMAD SPPGAGDGEE SPEEERYIDE EEEEVEEMVE EEEDDEEGEE  60
GSQGEGAEDE EEVAEVEGEE GSDSSDAEAH PGEDAHDASE KVESAGNGKD LKSVSSLHKR  120
SCIDQSLAIH GRDGVGDLTA SDSSPKLLAV DSEQGSAIND RDTRSAIQDK HIMSSEKSKF  180
FISHLAGRDI EVLLEKETSI EASKDGRRYN FETHGNYKSN LSSDCSISGK DTRSFHVNED  240
KPVVQSMIKS GSRYGKMDGA IEKDAPNPYT KINLHPPEDF GVSSIHTPQR RRRSSSPGAP  300
FEISKKRPAI ICAFFKQGWC IKGNSCSFLH LKEEDARSSQ WAKENIAESN TMYDSMDHTG  360
SREEAQRLKP STSHEPLDSL NFEKPSKLDL QRALVRAYGG EGSGFTQFHD EYDKHSSKIS  420
AEEHFRYDIS GSDRALNLPV NELRKASLVQ EGYQRPIGVS PYLHPMDERH SASGEFLSRR  480
YLDEGKLHQE MPKEEFLNDA TFSRASPLSR NPLILESGYY SEQSSAAAGL YQNSNNSYSH  540
GKMTEDVAIG YQQSRFPPPD PKYCSYSLSS SSNLRFDNSF QPLSGSPPVQ TLAQTGTSST  600
SRSMPLSAEH FDSNRTFNFN RGYYGSRSAS LPSNSSPYYS RSEIGSNMQQ DILADVPPSA  660
GSKIQVNSWE PSERFQSSFC APASKPSPGS QYDPLIDSIE HPKAGNVTIQ TSPITIIHNV  720
SSQHISGHAP VYSSQKPLNS PHHSTEDIFD ESALAHQFNG HIAPLPATGP DTVDAGKSSV  780
PKDEKCWVPH VTDGENINVV DLGNNTRNQV DKARNDKESK ALRIFRVALV DFVKELVKPF  840
WREGHLSKDA HKMIVKKAVE KVIGSLQPHQ IPSTAESINQ YLSLSQTKLL KLVEAYVDKY  900
AKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010928945.10.0PREDICTED: zinc finger CCCH domain-containing protein 36
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110102123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.18e-29C3H family protein